RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00048
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00048
Molecule name [?]:NMR ANALYSIS OF HELIX I FROM THE 5S RNA OF ESCHERICHIA COLI
Source [?]:RCSB Protein Data Bank
Source ID [?]:1ELH
Reference [?]:S.A.WHITE,M.NILGES,A.HUANG,A.T.BRUNGER,P.B.MOORE. NMR ANALYSIS OF HELIX I FROM THE 5S RNA OF ESCHERICHIA COLI.. BIOCHEMISTRY V. 31 1610 1992 ASTM BICHAW US ISSN 0006-2960
Type [?]:5S Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:ESCHERICHIA COLI
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:2
Length [?]:25
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:7
Number of paired bases [?]:18

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:9
Maximum length of a stem [?]:9
Average length of a stem [?]:9
Minimum length of a stem [?]:9
Maximum estimated free energy [?]:-21.1
Average estimated free energy [?]:-21.1
Minimum estimated free energy [?]:-21.1

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:3
Average number of free bases in hairpin loops [?]:3
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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