RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00052
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00052
Molecule name [?]:CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION
Source [?]:RCSB Protein Data Bank
Source ID [?]:1EVV
Reference [?]:L.JOVINE,S.DJORDJEVIC,D.RHODES. THE CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRNA AT 2.0 A RESOLUTION: CLEAVAGE BY MG(2+) IN 15-YEAR OLD CRYSTALS.. J.MOL.BIOL. V. 301 401 2000 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SACCHAROMYCES
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.00 ANGSTROMS; ran through RNAview
Number of molecules [?]:1
Length [?]:76
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00045, PDB_00222, PDB_00223, PDB_00279, PDB_00280, PDB_00281
Number of domains [?]:1
Number of unpaired bases [?]:30
Number of paired bases [?]:46

Click on any header below for additional features.

Stem features

Number of stems [?]:4
Number of base pairs in stems [?]:23
Maximum length of a stem [?]:7
Average length of a stem [?]:5.75
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-7.9
Average estimated free energy [?]:-9.23
Minimum estimated free energy [?]:-10.6

Hairpin loop features

Number of hairpin loops [?]:3
Maximum number of free bases in hairpin loops [?]:8
Average number of free bases in hairpin loops [?]:6.67
Minimum number of free bases in hairpin loop [?]:5

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:4
Average number of free bases in multi-loops:1.5
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:4
Average multi-loop absolute asymmetry:2.33
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:2
Average multi-loop relative asymmetry:0.42
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AC non-canonical base pairs:1
Total number of AG non-canonical base pairs:1

Pseudoknot features



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