RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00054
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00054
Molecule name [?]:THE G7(SYN)-G4(ANTI) STRUCTURE OF R(GCAGGCGUGC)2
Source [?]:RCSB Protein Data Bank
Source ID [?]:1F5G
Reference [?]:M.E.BURKARD,D.H.TURNER. NMR STRUCTURES OF R(GCAGGCGUGC)2 AND DETERMINANTS OF STABILITY FOR SINGLE GUANOSINE-GUANOSINE BASE PAIRS. BIOCHEMISTRY V. 39 11748 2000 ASTM BICHAW US ISSN 0006-2960
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:2
Length [?]:20
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00055
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:20

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:10
Maximum length of a stem [?]:10
Average length of a stem [?]:10
Minimum length of a stem [?]:10
Maximum estimated free energy [?]:-14.4
Average estimated free energy [?]:-14.4
Minimum estimated free energy [?]:-14.4

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of GG non-canonical base pairs:2

Pseudoknot features



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