RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00074
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Format:
Molecule ID [?]:PDB_00074
Molecule name [?]:CRYSTAL STRUCTURE OF A 14BP RNA OLIGONUCLEOTIDE CONTAINING DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR
Source [?]:RCSB Protein Data Bank
Source ID [?]:1FUF
Reference [?]:J.DENG,Y.XIONG,C.SUDARSANAKUMAR,K.SHI, M.SUNDARALINGAM. CRYSTAL STRUCTURES OF TWO FORMS OF A 14-MER RNA/DNA CHIMER DUPLEX WITH DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR U*(A X U) BASE TRIPLE.. RNA V. 7 1425 2001 ASTM RNARFU UK ISSN 1355-8382
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 1.70 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:28
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:4
Number of paired bases [?]:24

Click on any header below for additional features.

Stem features

Number of stems [?]:3
Number of base pairs in stems [?]:12
Maximum length of a stem [?]:5
Average length of a stem [?]:4
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-2.4
Average estimated free energy [?]:-6.27
Minimum estimated free energy [?]:-8.2

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:2
Maximum number of free bases in bulge loops [?]:2
Average number of free bases in bulge loops [?]:1
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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