RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00077 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00077 Molecule name [?]: STRUCTURE OF RNA DUPLEXES (CIGCGICG)2 Source [?]: RCSB Protein Data Bank Source ID [?]: 1G3A Reference [?]: X.CHEN,R.KIERZEK,D.H.TURNER. STABILITY AND STRUCTURE OF RNA DUPLEXES CONTAINING ISOGUANOSINE AND ISOCYTIDINE.. J.AM.CHEM.SOC. V. 123 1267 2001 ASTM JACSAT US ISSN 0002-7863 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 2 Length [?]: 12 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 12

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 6 Maximum length of a stem [?]: 6 Average length of a stem [?]: 6 Minimum length of a stem [?]: 6 Maximum estimated free energy [?]: -11 Average estimated free energy [?]: -11 Minimum estimated free energy [?]: -11

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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