RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule PDB_00093
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00093
Molecule name [?]:THE SOLUTION STRUCTURE OF THE MINOR FAMILY OF THE MUTANT STEM LOOP C 5'UUA3' TRILOOP OF BROME MOSAIC
Source [?]:RCSB Protein Data Bank
Source ID [?]:1I4C
Reference [?]:C.H.KIM,I.TINOCO JR.. STRUCTURAL AND THERMODYNAMIC STUDIES ON MUTANT RNA MOTIFS THAT IMPAIR THE SPECIFICITY BETWEEN A VIRAL REPLICASE AND ITS PROMOTER.. J.MOL.BIOL. V. 307 827 2001 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:13
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00092
Number of domains [?]:1
Number of unpaired bases [?]:3
Number of paired bases [?]:10

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:5
Maximum length of a stem [?]:5
Average length of a stem [?]:5
Minimum length of a stem [?]:5
Maximum estimated free energy [?]:-11
Average estimated free energy [?]:-11
Minimum estimated free energy [?]:-11

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:3
Average number of free bases in hairpin loops [?]:3
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia