RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00102
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00102
Molecule name [?]:	ACCEPTOR STEM, NMR, 30 STRUCTURES
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1IKD
Reference [?]:	A.RAMOS,G.VARANI. STRUCTURE OF THE ACCEPTOR STEM OF ESCHERICHIA COLI TRNA ALA: ROLE OF THE G3.U70 BASE PAIR IN SYNTHETASE RECOGNITION.. NUCLEIC ACIDS RES. V. 25 2083 1997 ASTM NARHAD UK ISSN 0305-1048
Type [?]:	Transfer RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	22
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	6
Number of paired bases [?]:	16

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	8
Maximum length of a stem [?]:	8
Average length of a stem [?]:	8
Minimum length of a stem [?]:	8
Maximum estimated free energy [?]:	-16.9
Average estimated free energy [?]:	-16.9
Minimum estimated free energy [?]:	-16.9

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features