RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00113
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00113
Molecule name [?]:SOLUTION STRUCTURE OF HELIX III IN XENOPUS OOCYTE 5S RRNA.
Source [?]:RCSB Protein Data Bank
Source ID [?]:1JUR
Reference [?]:P.W.HUBER,J.P.RIFE,P.B.MOORE. THE STRUCTURE OF HELIX III IN XENOPUS OOCYTE 5 S RRNA: AN RNA STEM CONTAINING A TWO-NUCLEOTIDE BULGE.. J.MOL.BIOL. V. 312 823 2001 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Other RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:22
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:4
Number of paired bases [?]:18

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:9
Maximum length of a stem [?]:6
Average length of a stem [?]:4.5
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-6.7
Average estimated free energy [?]:-7.7
Minimum estimated free energy [?]:-8.7

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:2
Average number of free bases in bulge loops [?]:1
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of AG non-canonical base pairs:1

Pseudoknot features



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