RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule PDB_00146
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00146
Molecule name [?]:SEPARATE FITTING OF THE ANTICODON LOOP REGION OF TRNA (NUCLEOTIDE 26-42) IN THE LOW RESOLUTION CRYO-
Source [?]:RCSB Protein Data Bank
Source ID [?]:1LU3
Reference [?]:M.VALLE,J.SENGUPTA,N.K.SWAMI,R.A.GRASSUCCI, N.BURKHARDT,K.H.NIERHAUS,R.K.AGRAWAL,J.FRANK. CRYO-EM REVEALS AN ACTIVE ROLE FOR AMINOACYL-TRNA IN THE ACCOMMODATION PROCESS.. EMBO J. V. 21 3557 2002 ASTM EMJODG UK ISSN 0261-4189
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SACCHAROMYCES CEREVISIAE
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION16.80 ANGSTROMS; ran through RNAview
Number of molecules [?]:1
Length [?]:17
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:9
Number of paired bases [?]:8

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:4
Maximum length of a stem [?]:4
Average length of a stem [?]:4
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-6.6
Average estimated free energy [?]:-6.6
Minimum estimated free energy [?]:-6.6

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:7
Minimum number of free bases in hairpin loop [?]:7

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia