RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00155
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00155
Molecule name [?]:CRYSTAL STRUCTURE ANALYSIS OF A 26MER RNA MOLECULE, REPRESENTING A NEW RNA MOTIF, THE HOOK-TURN
Source [?]:RCSB Protein Data Bank
Source ID [?]:1MHK
Reference [?]:S.SZEP,J.WANG,P.B.MOORE. THE CRYSTAL STRUCTURE OF A 26-NUCLEOTIDE RNA CONTAINING A HOOK-TURN. RNA V. 9 44 2003 ASTM RNARFU UK ISSN 1355-8382
Type [?]:Other RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.50 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:26
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:10
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:8
Maximum length of a stem [?]:8
Average length of a stem [?]:8
Minimum length of a stem [?]:8
Maximum estimated free energy [?]:-9
Average estimated free energy [?]:-9
Minimum estimated free energy [?]:-9

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:10
Average number of free bases in hairpin loops [?]:10
Minimum number of free bases in hairpin loop [?]:10

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of AG non-canonical base pairs:1

Pseudoknot features



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