RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule PDB_00156
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00156
Molecule name [?]:STRUCTURE OF RNA (5'-R(GP*CP*GP*GP*AP*CP*GP*C)-3') ANTI- PARALLEL RNA DUPLEX WITH TANDEM G:A MISMATC
Source [?]:RCSB Protein Data Bank
Source ID [?]:1MIS
Reference [?]:M.WU,D.H.TURNER. SOLUTION STRUCTURE OF (RGCGGACGC)2 BY TWO-DIMENSIONAL NMR AND THE ITERATIVE RELAXATION MATRIX APPROACH.. BIOCHEMISTRY V. 35 9677 1996 ASTM BICHAW US ISSN 0006-2960
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:2
Length [?]:16
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:8
Maximum length of a stem [?]:8
Average length of a stem [?]:8
Minimum length of a stem [?]:8
Maximum estimated free energy [?]:-11.6
Average estimated free energy [?]:-11.6
Minimum estimated free energy [?]:-11.6

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AG non-canonical base pairs:2

Pseudoknot features



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia