RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00157
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00157
Molecule name [?]:THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEA
Source [?]:RCSB Protein Data Bank
Source ID [?]:1MME
Reference [?]:W.G.SCOTT,J.T.FINCH,A.KLUG. THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE.. CELL V. 81 991 1995 ASTM CELLB5 US ISSN 0092-8674
Type [?]:Hammerhead Ribozyme

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 3.10 ANGSTROMS; ran through RNAview
Number of molecules [?]:4
Length [?]:82
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:24
Number of paired bases [?]:58

Click on any header below for additional features.

Stem features

Number of stems [?]:6
Number of base pairs in stems [?]:29
Maximum length of a stem [?]:7
Average length of a stem [?]:4.83
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-4.5
Average estimated free energy [?]:-7.03
Minimum estimated free energy [?]:-10

Hairpin loop features

Number of hairpin loops [?]:4
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:1
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:5
Average number of free bases in multi-loops:2
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:4
Average multi-loop absolute asymmetry:2.34
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:5
Average multi-loop relative asymmetry:0.9
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:3
Average number of branches in multi-loops:3
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 7
Total number of AG non-canonical base pairs:5
Total number of CC non-canonical base pairs:2

Pseudoknot features



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