RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00158
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00158
Molecule name [?]:THE SOLUTION STRUCTURE OF THE LOOP E REGION OF THE 5S RRNA FROM SPINACH CHLOROPLASTS.
Source [?]:RCSB Protein Data Bank
Source ID [?]:1MNX
Reference [?]:P.VALLURUPALLI,P.B.MOORE. THE SOLUTION STRUCTURE OF THE LOOP E REGION OF THE 5S RRNA FROM SPINACH CHLOROPLASTS. J.MOL.BIOL. V. 325 843 2003 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:5S Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SPINACIA OLERACEA
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:42
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:2
Number of paired bases [?]:40

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:20
Maximum length of a stem [?]:20
Average length of a stem [?]:20
Minimum length of a stem [?]:20
Maximum estimated free energy [?]:-24.9
Average estimated free energy [?]:-24.9
Minimum estimated free energy [?]:-24.9

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 6
Total number of AA non-canonical base pairs:2
Total number of AC non-canonical base pairs:1
Total number of AG non-canonical base pairs:3

Pseudoknot features



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