RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00159 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00159 Molecule name [?]: GUAA TETRALOOP MUTANT OF SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA Source [?]: RCSB Protein Data Bank Source ID [?]: 1MSY Reference [?]: C.C.CORRELL,K.SWINGER. COMMON AND DISTINCTIVE FEATURES OF GNRA TETRALOOPS BASED ON A GUAA TETRALOOP STRUCTURE AT 1.4 A RESOLUTION. RNA V. 9 355 2003 ASTM RNARFU UK ISSN 1355-8382 Type [?]: 23S Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: E. COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.41 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 27 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 5 Number of paired bases [?]: 22

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 11 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5.5 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -5 Minimum estimated free energy [?]: -10

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 2 Average number of free bases in internal loops: 1.5 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 1 Average internal loop absolute asymmetry: 1 Minimum internal loop absolute asymmetry: 1 Maximum internal loop relative asymmetry: 2 Average internal loop relative asymmetry: 2 Minimum internal loop relative asymmetry: 2

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 3 Total number of AG non-canonical base pairs: 2 Total number of CU non-canonical base pairs: 1

Pseudoknot features

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