RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00172
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00172
Molecule name [
?
]:
IRON RESPONSIVE ELEMENT RNA HAIRPIN, NMR, 15 STRUCTURES
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1NBR
Reference [
?
]:
S.A.MCCALLUM,A.PARDI. REFINED SOLUTION STRUCTURE OF THE IRON-RESPONSIVE ELEMENT RNA USING RESIDUAL DIPOLAR COUPLINGS. J.MOL.BIOL. V. 326 1037 2003 ASTM JMOBAK UK ISSN 0022-2836
Type [
?
]:
Synthetic RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
SYNTHETIC
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
NMR; ran through RNAview
Number of molecules [
?
]:
1
Length [
?
]:
29
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
Molecules in the database with the same sequence:
PDB_00013
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
7
Number of paired bases [
?
]:
22
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
2
Number of base pairs in stems [
?
]:
11
Maximum length of a stem [
?
]:
6
Average length of a stem [
?
]:
5.5
Minimum length of a stem [
?
]:
5
Maximum estimated free energy [
?
]:
-5.8
Average estimated free energy [
?
]:
-8.75
Minimum estimated free energy [
?
]:
-11.7
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
6
Average number of free bases in hairpin loops [
?
]:
6
Minimum number of free bases in hairpin loop [
?
]:
6
Bulge loop features
Number of bulge loops [
?
]:
1
Maximum number of free bases in bulge loops [
?
]:
1
Average number of free bases in bulge loops [
?
]:
0.5
Minimum number of free bases in bulge loop [
?
]:
0
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
0
Pseudoknot features
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