RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00172
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00172
Molecule name [?]:IRON RESPONSIVE ELEMENT RNA HAIRPIN, NMR, 15 STRUCTURES
Source [?]:RCSB Protein Data Bank
Source ID [?]:1NBR
Reference [?]:S.A.MCCALLUM,A.PARDI. REFINED SOLUTION STRUCTURE OF THE IRON-RESPONSIVE ELEMENT RNA USING RESIDUAL DIPOLAR COUPLINGS. J.MOL.BIOL. V. 326 1037 2003 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:29
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00013
Number of domains [?]:1
Number of unpaired bases [?]:7
Number of paired bases [?]:22

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:11
Maximum length of a stem [?]:6
Average length of a stem [?]:5.5
Minimum length of a stem [?]:5
Maximum estimated free energy [?]:-5.8
Average estimated free energy [?]:-8.75
Minimum estimated free energy [?]:-11.7

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:6
Average number of free bases in hairpin loops [?]:6
Minimum number of free bases in hairpin loop [?]:6

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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