RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00175 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00175 Molecule name [?]: THE LEADZYME STRUCTURE BOUND TO MG(H20)6(II) AT 1.8 A RESOLUTION Source [?]: RCSB Protein Data Bank Source ID [?]: 1NUJ Reference [?]: J.E.WEDEKIND,D.B.MCKAY. CRYSTAL STRUCTURE OF THE LEADZYME AT 1.8 A RESOLUTION: METAL ION BINDING AND THE IMPLICATIONS FOR CATALYTIC MECHANISM AND ALLO SITE ION REGULATION.. BIOCHEMISTRY V. 42 9554 2003 ASTM BICHAW US ISSN 0006-2960 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.80 ANGSTROMS; ran through RNAview Number of molecules [?]: 8 Length [?]: 96 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00176 Number of domains [?]: 4 Number of unpaired bases [?]: 24 Number of paired bases [?]: 72

Click on any header below for additional features.

Stem features Number of stems [?]: 8 Number of base pairs in stems [?]: 36 Maximum length of a stem [?]: 5 Average length of a stem [?]: 4.5 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -7.5 Average estimated free energy [?]: -7.7 Minimum estimated free energy [?]: -7.9

Hairpin loop features Number of hairpin loops [?]: 4 Maximum number of free bases in hairpin loops [?]: 1 Average number of free bases in hairpin loops [?]: 1 Minimum number of free bases in hairpin loop [?]: 1

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 4 Maximum number of free bases in internal loops: 3 Average number of free bases in internal loops: 2 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 2 Average internal loop absolute asymmetry: 2 Minimum internal loop absolute asymmetry: 2 Maximum internal loop relative asymmetry: 3 Average internal loop relative asymmetry: 3 Minimum internal loop relative asymmetry: 3

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 4 Total number of AC non-canonical base pairs: 4

Pseudoknot features

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