RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00177
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00177
Molecule name [
?
]:
SOLUTION STRUCTURE OF THE S. CEREVISIAE U6 INTRAMOLECULAR STEM-LOOP CONTAINING AN SP PHOSPHOROTHIOAT
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1NZ1
Reference [
?
]:
N.J.REITER,L.J.NIKSTAD,A.M.ALLMAN,R.J.JOHNSON, S.E.BUTCHER. STRUCTURE OF THE U6 RNA INTRAMOLECULAR STEM-LOOP HARBORING AN S(P)-PHOSPHOROTHIOATE MODIFICATION.. RNA V. 9 533 2003 ASTM RNARFU UK ISSN 1355-8382
Type [
?
]:
Synthetic RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
SYNTHETIC
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
NMR; ran through RNAview
Number of molecules [
?
]:
1
Length [
?
]:
24
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
Molecules in the database with the same sequence:
PDB_00141
,
PDB_00218
,
PDB_00721
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
4
Number of paired bases [
?
]:
20
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
2
Number of base pairs in stems [
?
]:
10
Maximum length of a stem [
?
]:
5
Average length of a stem [
?
]:
5
Minimum length of a stem [
?
]:
5
Maximum estimated free energy [
?
]:
-5.4
Average estimated free energy [
?
]:
-7.1
Minimum estimated free energy [
?
]:
-8.8
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
3
Average number of free bases in hairpin loops [
?
]:
3
Minimum number of free bases in hairpin loop [
?
]:
3
Bulge loop features
Number of bulge loops [
?
]:
1
Maximum number of free bases in bulge loops [
?
]:
1
Average number of free bases in bulge loops [
?
]:
0.5
Minimum number of free bases in bulge loop [
?
]:
0
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
2
Total number of AC non-canonical base pairs:
1
Total number of AG non-canonical base pairs:
1
Pseudoknot features
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