RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00189
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00189
Molecule name [?]:STRUCTURE OF 16S RIBOSOMAL RNA, NMR, MINIMIZED AVERAGE STRUCTURE
Source [?]:RCSB Protein Data Bank
Source ID [?]:1PBR
Reference [?]:D.FOURMY,M.I.RECHT,S.C.BLANCHARD,J.D.PUGLISI. STRUCTURE OF THE A SITE OF ESCHERICHIA COLI 16S RIBOSOMAL RNA COMPLEXED WITH AN AMINOGLYCOSIDE ANTIBIOTIC.. SCIENCE V. 274 1367 1996 ASTM SCIEAS US ISSN 0036-8075
Type [?]:Other RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:27
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00003, PDB_00023
Number of domains [?]:1
Number of unpaired bases [?]:9
Number of paired bases [?]:18

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:9
Maximum length of a stem [?]:5
Average length of a stem [?]:4.5
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-9.1
Average estimated free energy [?]:-9.4
Minimum estimated free energy [?]:-9.7

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:4
Average number of free bases in internal loops:3.5
Minimum number of free bases in internal loop:3
Maximum internal loop absolute asymmetry:1
Average internal loop absolute asymmetry:1
Minimum internal loop absolute asymmetry:1
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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