RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00196
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Format:

Molecule ID [?]:	PDB_00196
Molecule name [?]:	CRYSTAL STRUCTURE OF A 19 BASE PAIR COPY CONTROL RELATED RNA DUPLEX
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1QC0
Reference [?]:	P.S.KLOSTERMAN,S.A.SHAH,T.A.STEITZ. CRYSTAL STRUCTURES OF TWO PLASMID COPY CONTROL RELATED RNA DUPLEXES: AN 18 BASE PAIR DUPLEX AT 1.20 A RESOLUTION AND A 19 BASE PAIR DUPLEX AT 1.55 A RESOLUTION.. BIOCHEMISTRY V. 38 14784 1999 ASTM BICHAW US ISSN 0006-2960
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 1.55 ANGSTROMS; ran through RNAview
Number of molecules [?]:	4
Length [?]:	57
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	2
Number of unpaired bases [?]:	1
Number of paired bases [?]:	56

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	28
Maximum length of a stem [?]:	19
Average length of a stem [?]:	14
Minimum length of a stem [?]:	9
Maximum estimated free energy [?]:	-20.2
Average estimated free energy [?]:	-32.25
Minimum estimated free energy [?]:	-44.3

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features