RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00197 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00197 Molecule name [?]: NMR STRUCTURE OF TAU EXON 10 SPLICING REGULATORY ELEMENT RNA Source [?]: RCSB Protein Data Bank Source ID [?]: 1QC8 Reference [?]: L.VARANI,M.HASEGAWA,M.G.SPILLANTINI,M.J.SMITH, J.R.MURRELL,B.GHETTI,A.KLUG,M.GOEDERT,G.VARANI. STRUCTURE OF TAU EXON 10 SPLICING REGULATORY ELEMENT RNA AND DESTABILIZATION BY MUTATIONS OF FRONTOTEMPORAL DEMENTIA AND PARKINSONISM LINKED TO CHROMOSOME 17.. PROC.NATL.ACAD.SCI.USA V. 96 8229 1999 ASTM PNASA6 US ISSN 0027-8424 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 25 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00361 Number of domains [?]: 1 Number of unpaired bases [?]: 11 Number of paired bases [?]: 14

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 7 Maximum length of a stem [?]: 7 Average length of a stem [?]: 7 Minimum length of a stem [?]: 7 Maximum estimated free energy [?]: -11.6 Average estimated free energy [?]: -11.6 Minimum estimated free energy [?]: -11.6

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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