RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00200
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00200
Molecule name [?]:NMR STRUCTURE OF 5'-R(GGAUGCCUCCCGAGUGCAUCC): AN RNA HAIRPIN DERIVED FROM THE MOUSE 5'ETS THAT BINDS
Source [?]:RCSB Protein Data Bank
Source ID [?]:1QWA
Reference [?]:L.D.FINGER,L.TRANTIREK,C.JOHANSSON,J.FEIGON. SOLUTION STRUCUTRES OF STEM-LOOP RNAS THAT BIND TO THE TWO N-TERMINAL RNA BINDING DOMAINS OF NUCLEOLIN. NUCLEIC ACIDS RES. V. 31 6461 2003 ASTM NARHAD UK ISSN 0305-1048
Type [?]:Other Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:21
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00691
Number of domains [?]:1
Number of unpaired bases [?]:3
Number of paired bases [?]:18

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:9
Maximum length of a stem [?]:6
Average length of a stem [?]:4.5
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-4.5
Average estimated free energy [?]:-8.4
Minimum estimated free energy [?]:-12.3

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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