RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00207
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00207
Molecule name [?]:CRYSTALLOGRAPHIC STRUCTURE OF AN RNA HELIX: [U(U-A)6A]2
Source [?]:RCSB Protein Data Bank
Source ID [?]:1RNA
Reference [?]:A.C.DOCK-BREGEON,B.CHEVRIER,A.PODJARNY,J.JOHNSON, J.S.DE BEAR,G.R.GOUGH,P.T.GILHAM,D.MORAS. CRYSTALLOGRAPHIC STRUCTURE OF AN RNA HELIX: [U(UA)6A]2.. J.MOL.BIOL. V. 209 459 1989 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.25 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:28
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:28

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:14
Maximum length of a stem [?]:14
Average length of a stem [?]:14
Minimum length of a stem [?]:14
Maximum estimated free energy [?]:-15.1
Average estimated free energy [?]:-15.1
Minimum estimated free energy [?]:-15.1

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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