RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00212
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00212
Molecule name [
?
]:
CRYSTAL STRUCTURE OF R(CCCCGGGG) IN TWO DISTINCT LATTICES
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1RXB
Reference [
?
]:
S.PORTMANN,N.USMAN,M.EGLI. THE CRYSTAL STRUCTURE OF R(CCCCGGGG) IN TWO DISTINCT LATTICES.. BIOCHEMISTRY V. 34 7569 1995 ASTM BICHAW US ISSN 0006-2960
Type [
?
]:
Synthetic RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
SYNTHETIC
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
X-RAY, RESOLUTION 1.80 ANGSTROMS; ran through RNAview
Number of molecules [
?
]:
2
Length [
?
]:
16
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
Molecules in the database with the same sequence:
NDB_00001
,
PDB_00235
,
PDB_00916
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
0
Number of paired bases [
?
]:
16
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
1
Number of base pairs in stems [
?
]:
8
Maximum length of a stem [
?
]:
8
Average length of a stem [
?
]:
8
Minimum length of a stem [
?
]:
8
Maximum estimated free energy [
?
]:
-22.2
Average estimated free energy [
?
]:
-22.2
Minimum estimated free energy [
?
]:
-22.2
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
0
Average number of free bases in hairpin loops [
?
]:
0
Minimum number of free bases in hairpin loop [
?
]:
0
Bulge loop features
Number of bulge loops [
?
]:
0
Maximum number of free bases in bulge loops [
?
]:
N/A
Average number of free bases in bulge loops [
?
]:
N/A
Minimum number of free bases in bulge loop [
?
]:
N/A
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
0
Pseudoknot features
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