RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00215
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00215
Molecule name [?]:	CRYSTAL STRUCTURE OF AN RNA DODECAMER CONTAINING THE ESCHERICHIA COLI SHINE-DALGARNO SEQUENCE
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1SDR
Reference [?]:	H.SCHINDELIN,M.ZHANG,R.BALD,J.P.FURSTE,V.A.ERDMANN, U.HEINEMANN. CRYSTAL STRUCTURE OF AN RNA DODECAMER CONTAINING THE ESCHERICHIA COLI SHINE-DALGARNO SEQUENCE.. J.MOL.BIOL. V. 249 595 1995 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.60 ANGSTROMS; ran through RNAview
Number of molecules [?]:	4
Length [?]:	48
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	2
Number of unpaired bases [?]:	0
Number of paired bases [?]:	48

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	24
Maximum length of a stem [?]:	12
Average length of a stem [?]:	12
Minimum length of a stem [?]:	12
Maximum estimated free energy [?]:	-23.2
Average estimated free energy [?]:	-23.2
Minimum estimated free energy [?]:	-23.2

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features