RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00236 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00236 Molecule name [?]: THE STRUCTURE OF AN RNA DODECAMER SHOWS HOW TANDEM U-U BASE PAIRS INCREASE THE RANGE OF STABLE RNA S Source [?]: RCSB Protein Data Bank Source ID [?]: 280D Reference [?]: S.E.LIETZKE,C.L.BARNES,J.A.BERGLUND,C.E.KUNDROT. THE STRUCTURE OF AN RNA DODECAMER SHOWS HOW TANDEM U-U BASE PAIRS INCREASE THE RANGE OF STABLE RNA STRUCTURES AND THE DIVERSITY OF RECOGNITION SITES.. STRUCTURE V. 4 917 1996 ASTM STRUE6 UK ISSN 0969-2126 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.40 ANGSTROMS; ran through RNAview Number of molecules [?]: 4 Length [?]: 48 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 0 Number of paired bases [?]: 48

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 24 Maximum length of a stem [?]: 12 Average length of a stem [?]: 12 Minimum length of a stem [?]: 12 Maximum estimated free energy [?]: -19.6 Average estimated free energy [?]: -19.6 Minimum estimated free energy [?]: -19.6

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 4 Total number of UU non-canonical base pairs: 4

Pseudoknot features

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