RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00238 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00238 Molecule name [?]: NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA Source [?]: RCSB Protein Data Bank Source ID [?]: 28SR Reference [?]: U.SCHMITZ,T.L.JAMES,P.LUKAVSKY,P.WALTER. STRUCTURE OF THE MOST CONSERVED INTERNAL LOOP IN SRP RNA.. NAT.STRUCT.BIOL. V. 6 634 1999 ASTM NSBIEW US ISSN 1072-8368 Type [?]: Signal Recognition Particle RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 28 Fragments used [?]: Yes Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00237 Number of domains [?]: 1 Number of unpaired bases [?]: 8 Number of paired bases [?]: 20

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 10 Maximum length of a stem [?]: 5 Average length of a stem [?]: 5 Minimum length of a stem [?]: 5 Maximum estimated free energy [?]: -5.7 Average estimated free energy [?]: -8.65 Minimum estimated free energy [?]: -11.6

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 3 Average number of free bases in internal loops: 3 Minimum number of free bases in internal loop: 3 Maximum internal loop absolute asymmetry: 0 Average internal loop absolute asymmetry: 0 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AG non-canonical base pairs: 2

Pseudoknot features

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