RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00248 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00248 Molecule name [?]: CRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO I Source [?]: RCSB Protein Data Bank Source ID [?]: 353D Reference [?]: C.BETZEL,S.LORENZ,J.P.FURSTE,R.BALD,M.ZHANG, T.R.SCHNEIDER,K.S.WILSON,V.A.ERDMANN. CRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO ITS STRUCTURE.. FEBS LETT. V. 351 159 1994 ASTM FEBLAL NE ISSN 0014-5793 Type [?]: 5S Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.40 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 24 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 24

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 12 Maximum length of a stem [?]: 12 Average length of a stem [?]: 12 Minimum length of a stem [?]: 12 Maximum estimated free energy [?]: -27.1 Average estimated free energy [?]: -27.1 Minimum estimated free energy [?]: -27.1

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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