RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00249
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00249
Molecule name [?]:	STRUCTURE OF LOOP E FROM E. COLI 5S RRNA
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	354D
Reference [?]:	C.C.CORRELL,B.FREEBORN,P.B.MOORE,T.A.STEITZ. METALS, MOTIFS, AND RECOGNITION IN THE CRYSTAL STRUCTURE OF A 5S RRNA DOMAIN.. CELL V. 91 705 1997 ASTM CELLB5 US ISSN 0092-8674
Type [?]:	5S Ribosomal RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	E. COLI
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 1.50 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	24
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	2
Number of paired bases [?]:	22

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	11
Maximum length of a stem [?]:	11
Average length of a stem [?]:	11
Minimum length of a stem [?]:	11
Maximum estimated free energy [?]:	-7.2
Average estimated free energy [?]:	-7.2
Minimum estimated free energy [?]:	-7.2

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	1
Average number of free bases in hairpin loops [?]:	1
Minimum number of free bases in hairpin loop [?]:	1

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	4
Total number of AG non-canonical base pairs:	3
Total number of GG non-canonical base pairs:	1

Pseudoknot features