RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00250 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00250 Molecule name [?]: 3.5 A STRUCTURE OF FRAGMENT I FROM E. COLI 5S RRNA Source [?]: RCSB Protein Data Bank Source ID [?]: 357D Reference [?]: C.C.CORRELL,B.FREEBORN,P.B.MOORE,T.A.STEITZ. METALS, MOTIFS, AND RECOGNITION IN THE CRYSTAL STRUCTURE OF A 5S RRNA DOMAIN.. CELL V. 91 705 1997 ASTM CELLB5 US ISSN 0092-8674 Type [?]: 5S Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: E. COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.50 ANGSTROMS; ran through RNAview Number of molecules [?]: 3 Length [?]: 60 Fragments used [?]: Yes Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00253 Number of domains [?]: 1 Number of unpaired bases [?]: 10 Number of paired bases [?]: 50

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 25 Maximum length of a stem [?]: 11 Average length of a stem [?]: 6.25 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -10.53 Minimum estimated free energy [?]: -23.2

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 2 Maximum number of free bases in bulge loops [?]: 2 Average number of free bases in bulge loops [?]: 0.75 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 3 Average number of free bases in internal loops: 2.5 Minimum number of free bases in internal loop: 2 Maximum internal loop absolute asymmetry: 1 Average internal loop absolute asymmetry: 1 Minimum internal loop absolute asymmetry: 1 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 4 Total number of AC non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 3

Pseudoknot features

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