RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00252 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00252 Molecule name [?]: CRYSTAL STRUCTURE OF DOMAIN E OF THERMUS FLAVUS 5S RRNA: A HELICAL RNA-STRUCTURE INCLUDING A TETRALO Source [?]: RCSB Protein Data Bank Source ID [?]: 361D Reference [?]: M.PERBANDT,A.NOLTE,S.LORENZ,R.BALD,C.BETZEL, V.A.ERDMANN. CRYSTAL STRUCTURE OF DOMAIN E OF THERMUS FLAVUS 5S RRNA: A HELICAL RNA STRUCTURE INCLUDING A HAIRPIN LOOP.. FEBS LETT. V. 429 211 1998 ASTM FEBLAL NE ISSN 0014-5793 Type [?]: 5S Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.00 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 40 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 10 Number of paired bases [?]: 30

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 15 Maximum length of a stem [?]: 8 Average length of a stem [?]: 7.5 Minimum length of a stem [?]: 7 Maximum estimated free energy [?]: -14.2 Average estimated free energy [?]: -14.2 Minimum estimated free energy [?]: -14.2

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 3 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of AG non-canonical base pairs: 1

Pseudoknot features

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