RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00265 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00265 Molecule name [?]: STRUCTURE OF SARCIN/RICIN LOOP FROM RAT 28S RRNA Source [?]: RCSB Protein Data Bank Source ID [?]: 430D Reference [?]: C.C.CORRELL,A.MUNISHKIN,Y.L.CHAN,Z.REN,I.G.WOOL, T.A.STEITZ. CRYSTAL STRUCTURE OF THE RIBOSOMAL RNA DOMAIN ESSENTIAL FOR BINDING ELONGATION FACTORS.. PROC.NATL.ACAD.SCI.USA V. 95 13436 1998 ASTM PNASA6 US ISSN 0027-8424 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.10 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 29 Fragments used [?]: Yes Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00214 Number of domains [?]: 1 Number of unpaired bases [?]: 7 Number of paired bases [?]: 22

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 11 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5.5 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -7.15 Minimum estimated free energy [?]: -14.3

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 3 Average number of free bases in internal loops: 2.5 Minimum number of free bases in internal loop: 2 Maximum internal loop absolute asymmetry: 1 Average internal loop absolute asymmetry: 1 Minimum internal loop absolute asymmetry: 1 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 3 Total number of AG non-canonical base pairs: 2 Total number of CU non-canonical base pairs: 1

Pseudoknot features

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