RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00269
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Format:
Molecule ID [?]:PDB_00269
Molecule name [?]:CRYSTAL STRUCTURE OF AN RNA PSEUDOKNOT FROM BEET WESTERN YELLOW VIRUS INVOLVED IN RIBOSOMAL FRAMESHI
Source [?]:RCSB Protein Data Bank
Source ID [?]:437D
Reference [?]:L.SU,L.CHEN,M.EGLI,J.M.BERGER,A.RICH. MINOR GROOVE RNA TRIPLEX IN THE CRYSTAL STRUCTURE OF A RIBOSOMAL FRAMESHIFTING VIRAL PSEUDOKNOT.. NAT.STRUCT.BIOL. V. 6 285 1999 ASTM NSBIEW US ISSN 1072-8368
Type [?]:Other Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:BEET WESTERN
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 1.60 ANGSTROMS; ran through RNAview
Number of molecules [?]:1
Length [?]:28
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00138, PDB_00139
Number of domains [?]:1
Number of unpaired bases [?]:12
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features


Hairpin loop features

Number of hairpin loops [?]:0
Maximum number of free bases in hairpin loops [?]:N/A
Average number of free bases in hairpin loops [?]:N/A
Minimum number of free bases in hairpin loop [?]:N/A

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:2
Number of base pairs in bands:8
Maximum band length:5
Average band length:4
Minimum band length:3
Maximum number of bands per pseudoknot:2
Average number of bands per pseudoknot:2
Minimum number of bands per pseudoknot:2
Maximum number of un-bands:0
Average number of un-bands:0
Minimum number of un-bands:0
Maximum number of in-bands:0
Average number of in-bands:0
Minimum number of in-bands:0
Maximum number of unpaired bases:10
Average number of unpaired bases:10
Minimum number of unpaired bases:10
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:3
Maximum number of base pairs to remove, per pseudoknot:3
Average number of base pairs to remove, per pseudoknot:3
Minimum number of base pairs to remove, per pseudoknot:3
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



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