RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00306
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00306
Molecule name [?]:ARG-BOUND TAR RNA, NMR
Source [?]:RCSB Protein Data Bank
Source ID [?]:1ARJ
Reference [?]:F.ABOUL-ELA,J.KARN,G.VARANI. THE STRUCTURE OF THE HUMAN IMMUNODEFICIENCY VIRUS TYPE-1 TAR RNA REVEALS PRINCIPLES OF RNA RECOGNITION BY TAT PROTEIN.. J.MOL.BIOL. V. 253 313 1995 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:29
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00012, PDB_00755, PDB_00756, PDB_00757
Number of domains [?]:1
Number of unpaired bases [?]:13
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:8
Maximum length of a stem [?]:4
Average length of a stem [?]:4
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-6.6
Average estimated free energy [?]:-7.25
Minimum estimated free energy [?]:-7.9

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:6
Average number of free bases in hairpin loops [?]:6
Minimum number of free bases in hairpin loop [?]:6

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:3
Average number of free bases in bulge loops [?]:1.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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