RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00308
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00308
Molecule name [?]:THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACY
Source [?]:RCSB Protein Data Bank
Source ID [?]:1ASZ
Reference [?]:J.CAVARELLI,G.ERIANI,B.REES,M.RUFF,M.BOEGLIN, A.MITSCHLER,F.MARTIN,J.GANGLOFF,J.C.THIERRY,D.MORAS. THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION.. EMBO J. V. 13 327 1994 ASTM EMJODG UK ISSN 0261-4189
Type [?]:Other RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SACCHAROMYCES CEREVISIAE
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 3.00 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:150
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00307
Number of domains [?]:2
Number of unpaired bases [?]:60
Number of paired bases [?]:90

Click on any header below for additional features.

Stem features

Number of stems [?]:8
Number of base pairs in stems [?]:45
Maximum length of a stem [?]:7
Average length of a stem [?]:5.62
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-3.6
Average estimated free energy [?]:-10.23
Minimum estimated free energy [?]:-14.4

Hairpin loop features

Number of hairpin loops [?]:6
Maximum number of free bases in hairpin loops [?]:8
Average number of free bases in hairpin loops [?]:7
Minimum number of free bases in hairpin loop [?]:5

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:3
Average number of free bases in multi-loops:1.25
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:3
Average multi-loop absolute asymmetry:1.83
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:1.5
Average multi-loop relative asymmetry:0.36
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AG non-canonical base pairs:2

Pseudoknot features



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