RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00313 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00313 Molecule name [?]: E. COLI CYSTEINYL-TRNA AND T. AQUATICUS ELONGATION FACTOR EF-TU:GTP TERNARY COMPLEX Source [?]: RCSB Protein Data Bank Source ID [?]: 1B23 Reference [?]: P.NISSEN,S.THIRUP,M.KJELDGAARD,J.NYBORG. THE CRYSTAL STRUCTURE OF CYS-TRNACYS-EF-TU-GDPNP REVEALS GENERAL AND SPECIFIC FEATURES IN THE TERNARY COMPLEX AND IN TRNA.. STRUCTURE FOLD.DES. V. 7 143 1999 ASTM FODEFH UK ISSN 1359-0278 Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.60 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 74 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 36 Number of paired bases [?]: 38

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 19 Maximum length of a stem [?]: 7 Average length of a stem [?]: 4.75 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -4.3 Average estimated free energy [?]: -10.25 Minimum estimated free energy [?]: -17.1

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 9 Average number of free bases in hairpin loops [?]: 8.33 Minimum number of free bases in hairpin loop [?]: 7

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 4 Average number of free bases in multi-loops: 1.75 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 4 Average multi-loop absolute asymmetry: 2.17 Minimum multi-loop absolute asymmetry: 1 Maximum multi-loop relative asymmetry: 4 Average multi-loop relative asymmetry: 1.03 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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