RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00326
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00326
Molecule name [?]:IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM
Source [?]:RCSB Protein Data Bank
Source ID [?]:1C04
Reference [?]:N.BAN,P.NISSEN,J.HANSEN,M.CAPEL,P.B.MOORE, T.A.STEITZ. PLACEMENT OF PROTEIN AND RNA STRUCTURES INTO A 5 A-RESOLUTION MAP OF THE 50S RIBOSOMAL SUBUNIT.. NATURE V. 400 841 1999 ASTM NATUAS UK ISSN 0028-0836
Type [?]:Other Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:HALOARCULA MARISMORTUI
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 5.00 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:87
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:31
Number of paired bases [?]:56

Click on any header below for additional features.

Stem features

Number of stems [?]:6
Number of base pairs in stems [?]:28
Maximum length of a stem [?]:7
Average length of a stem [?]:4.67
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-6.97
Minimum estimated free energy [?]:-14.3

Hairpin loop features

Number of hairpin loops [?]:3
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:4.33
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:2
Maximum number of free bases in internal loops:3
Average number of free bases in internal loops:2.25
Minimum number of free bases in internal loop:2
Maximum internal loop absolute asymmetry:1
Average internal loop absolute asymmetry:0.5
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:8
Average number of free bases in multi-loops:3
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:8
Average multi-loop absolute asymmetry:5.33
Minimum multi-loop absolute asymmetry:1
Maximum multi-loop relative asymmetry:8
Average multi-loop relative asymmetry:2.03
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:3
Average number of branches in multi-loops:3
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 5
Total number of AG non-canonical base pairs:4
Total number of CU non-canonical base pairs:1

Pseudoknot features



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