RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00339 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00339 Molecule name [?]: NMR SOLUTION STRUCTURE OF THE 5S RRNA E-LOOP/L25 COMPLEX Source [?]: RCSB Protein Data Bank Source ID [?]: 1D6K Reference [?]: M.STOLDT,J.WOHNERT,O.OHLENSCHLAGER,M.GORLACH, L.R.BROWN. THE NMR STRUCTURE OF THE 5S RRNA E-DOMAIN-PROTEIN L25 COMPLEX SHOWS PREFORMED AND INDUCED RECOGNITION.. EMBO J. V. 18 6508 1999 ASTM EMJODG UK ISSN 0261-4189 Type [?]: 5S Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 37 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 5 Number of paired bases [?]: 32

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 16 Maximum length of a stem [?]: 16 Average length of a stem [?]: 16 Minimum length of a stem [?]: 16 Maximum estimated free energy [?]: -15.3 Average estimated free energy [?]: -15.3 Minimum estimated free energy [?]: -15.3

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4 Total number of UUCG hairpin motifs per molecule [?]: 1

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 4 Total number of AG non-canonical base pairs: 3 Total number of GG non-canonical base pairs: 1

Pseudoknot features

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