RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00341 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00341 Molecule name [?]: CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUT Source [?]: RCSB Protein Data Bank Source ID [?]: 1DFU Reference [?]: M.LU,T.A.STEITZ. STRUCTURE OF ESCHERICHIA COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8-A RESOLUTION.. PROC.NATL.ACAD.SCI.USA V. 97 2023 2000 ASTM PNASA6 US ISSN 0027-8424 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.80 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 38 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 6 Number of paired bases [?]: 32

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 16 Maximum length of a stem [?]: 16 Average length of a stem [?]: 16 Minimum length of a stem [?]: 16 Maximum estimated free energy [?]: -17 Average estimated free energy [?]: -17 Minimum estimated free energy [?]: -17

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 5 Average number of free bases in hairpin loops [?]: 5 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 4 Total number of AG non-canonical base pairs: 3 Total number of GG non-canonical base pairs: 1

Pseudoknot features

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