RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00400
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00400
Molecule name [?]:CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TL5, ONE OF THE CTC FAMILY PROTEINS, COMPLEXED WITH A FRAGMEN
Source [?]:RCSB Protein Data Bank
Source ID [?]:1FEU
Reference [?]:R.FEDOROV,V.MESHCHERYAKOV,G.GONGADZE,N.FOMENKOVA, N.NEVSKAYA,M.SELMER,M.LAURBERG,O.KRISTENSEN, S.AL-KARADAGHI,A.LILJAS,M.GARBER,S.NIKONOV. STRUCTURE OF RIBOSOMAL PROTEIN TL5 COMPLEXED WITH RNA PROVIDES NEW INSIGHTS INTO THE CTC FAMILY OF STRESS PROTEINS.. ACTA CRYSTALLOGR.,SECT.D V. 57 968 2001 ASTM ABCRE6 DK ISSN 0907-4449
Type [?]:Other Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:THERMUS THERMOPHILUS
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.30 ANGSTROMS; ran through RNAview
Number of molecules [?]:4
Length [?]:80
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:12
Number of paired bases [?]:68

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:34
Maximum length of a stem [?]:17
Average length of a stem [?]:17
Minimum length of a stem [?]:17
Maximum estimated free energy [?]:-20.3
Average estimated free energy [?]:-20.3
Minimum estimated free energy [?]:-20.3

Hairpin loop features

Number of hairpin loops [?]:2
Maximum number of free bases in hairpin loops [?]:1
Average number of free bases in hairpin loops [?]:1
Minimum number of free bases in hairpin loop [?]:1

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 8
Total number of AG non-canonical base pairs:6
Total number of GG non-canonical base pairs:2

Pseudoknot features



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