RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00426 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00426 Molecule name [?]: STRUCTURAL BASIS FOR TRANSFER RNA AMINOACEYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASE Source [?]: RCSB Protein Data Bank Source ID [?]: 1GTS Reference [?]: J.J.PERONA,M.A.ROULD,T.A.STEITZ. STRUCTURAL BASIS FOR TRANSFER RNA AMINOACYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASE.. BIOCHEMISTRY V. 32 8758 1993 ASTM BICHAW US ISSN 0006-2960 Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.80 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 74 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00425, PDB_00620, PDB_00621, PDB_00669, PDB_00670, PDB_00671, PDB_00672, PDB_00901, PDB_01258, PDB_01259 Number of domains [?]: 1 Number of unpaired bases [?]: 32 Number of paired bases [?]: 42

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 21 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5.25 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -6.7 Average estimated free energy [?]: -10.42 Minimum estimated free energy [?]: -13.4

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 9 Average number of free bases in hairpin loops [?]: 6.33 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 5 Average number of free bases in multi-loops: 2 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 5 Average multi-loop absolute asymmetry: 2.67 Minimum multi-loop absolute asymmetry: 1 Maximum multi-loop relative asymmetry: 5 Average multi-loop relative asymmetry: 1.18 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of UU non-canonical base pairs: 1

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia