RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00454 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00454 Molecule name [?]: RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOC Source [?]: RCSB Protein Data Bank Source ID [?]: 1I6U Reference [?]: S.TISHCHENKO,A.NIKULIN,N.FOMENKOVA,N.NEVSKAYA, O.NIKONOV,P.DUMAS,H.MOINE,B.EHRESMANN,C.EHRESMANN, W.PIENDL,V.LAMZIN,M.GARBER,S.NIKONOV. DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE RIBOSOMAL PROTEIN S8-RRNA COMPLEX FROM THE ARCHAEON METHANOCOCCUS JANNASCHII.. J.MOL.BIOL. V. 311 311 2001 ASTM JMOBAK UK ISSN 0022-2836 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: METHANOCOCCUS JANNASCHII Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.60 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 74 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 10 Number of paired bases [?]: 64

Click on any header below for additional features.

Stem features Number of stems [?]: 6 Number of base pairs in stems [?]: 32 Maximum length of a stem [?]: 9 Average length of a stem [?]: 5.33 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -2.1 Average estimated free energy [?]: -11.97 Minimum estimated free energy [?]: -24.8

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 4 Maximum number of free bases in bulge loops [?]: 2 Average number of free bases in bulge loops [?]: 0.75 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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