RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00472
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00472
Molecule name [?]:CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE:YEAST TRNAASP:ASPARTYL-ADENYLATE COMPLEX
Source [?]:RCSB Protein Data Bank
Source ID [?]:1IL2
Reference [?]:L.MOULINIER,S.EILER,G.ERIANI,J.GANGLOFF, J.C.THIERRY,K.GABRIEL,W.H.MCCLAIN,D.MORAS. THE STRUCTURE OF AN ASPRS-TRNA(ASP) COMPLEX REVEALS A TRNA-DEPENDENT CONTROL MECHANISM.. EMBO J. V. 20 5290 2001 ASTM EMJODG UK ISSN 0261-4189
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SACCHAROMYCES CEREVISIAE
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.60 ANGSTROMS; ran through RNAview
Number of molecules [?]:3
Length [?]:147
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:53
Number of paired bases [?]:94

Click on any header below for additional features.

Stem features

Number of stems [?]:8
Number of base pairs in stems [?]:47
Maximum length of a stem [?]:7
Average length of a stem [?]:5.88
Minimum length of a stem [?]:5
Maximum estimated free energy [?]:-3.6
Average estimated free energy [?]:-9.93
Minimum estimated free energy [?]:-14.4

Hairpin loop features

Number of hairpin loops [?]:6
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:6
Minimum number of free bases in hairpin loop [?]:5

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:3
Average number of free bases in multi-loops:1.25
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:3
Average multi-loop absolute asymmetry:1.83
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:1.5
Average multi-loop relative asymmetry:0.36
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 4
Total number of AA non-canonical base pairs:2
Total number of AG non-canonical base pairs:2

Pseudoknot features



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