RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00487
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00487
Molecule name [?]:	HUMAN SRP19 IN COMPLEX WITH HELIX 6 OF HUMAN SRP RNA
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1JID
Reference [?]:	K.WILD,I.SINNING,S.CUSACK. CRYSTAL STRUCTURE OF AN EARLY PROTEIN-RNA ASSEMBLY COMPLEX OF THE SIGNAL RECOGNITION PARTICLE.. SCIENCE V. 294 598 2001 ASTM SCIEAS US ISSN 0036-8075
Type [?]:	Signal Recognition Particle RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	HOMO SAPIENS
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 1.80 ANGSTROMS; ran through RNAview
Number of molecules [?]:	1
Length [?]:	29
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	5
Number of paired bases [?]:	24

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	12
Maximum length of a stem [?]:	12
Average length of a stem [?]:	12
Minimum length of a stem [?]:	12
Maximum estimated free energy [?]:	-19
Average estimated free energy [?]:	-19
Minimum estimated free energy [?]:	-19

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	4
Average number of free bases in hairpin loops [?]:	4
Minimum number of free bases in hairpin loop [?]:	4

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	2
Total number of AC non-canonical base pairs:	2

Pseudoknot features