RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00547
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00547
Molecule name [?]:CRYSTAL STRUCTURE OF THE SRP19-7S.S SRP RNA COMPLEX OF M. JANNASCHII
Source [?]:RCSB Protein Data Bank
Source ID [?]:1LNG
Reference [?]:T.HAINZL,S.HUANG,A.E.SAUER-ERIKSSON. STRUCTURE OF THE SRP19 RNA COMPLEX AND IMPLICATIONS FOR SIGNAL RECOGNITION PARTICLE ASSEMBLY.. NATURE V. 417 767 2002 ASTM NATUAS UK ISSN 0028-0836
Type [?]:Signal Recognition Particle RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:METHANOCOCCUS JANNASCHII
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.30 ANGSTROMS; ran through RNAview
Number of molecules [?]:1
Length [?]:97
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:27
Number of paired bases [?]:70

Click on any header below for additional features.

Stem features

Number of stems [?]:6
Number of base pairs in stems [?]:35
Maximum length of a stem [?]:9
Average length of a stem [?]:5.83
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-2.4
Average estimated free energy [?]:-10.13
Minimum estimated free energy [?]:-18

Hairpin loop features

Number of hairpin loops [?]:2
Maximum number of free bases in hairpin loops [?]:4
Average number of free bases in hairpin loops [?]:4
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:3
Maximum number of free bases in internal loops:4
Average number of free bases in internal loops:1.67
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:3
Average internal loop absolute asymmetry:1.33
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:4
Average internal loop relative asymmetry:2.33
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:4
Average number of free bases in multi-loops:2.33
Minimum number of free bases in multi-loop:1
Maximum multi-loop absolute asymmetry:3
Average multi-loop absolute asymmetry:2
Minimum multi-loop absolute asymmetry:1
Maximum multi-loop relative asymmetry:4
Average multi-loop relative asymmetry:1.54
Minimum multi-loop relative asymmetry:0.25
Maximum number of branches in multi-loops:3
Average number of branches in multi-loops:3
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 5
Total number of AC non-canonical base pairs:2
Total number of AG non-canonical base pairs:2
Total number of GG non-canonical base pairs:1

Pseudoknot features



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