RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00570 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00570 Molecule name [?]: DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMP Source [?]: RCSB Protein Data Bank Source ID [?]: 1MJI Reference [?]: A.PEREDERINA,N.NEVSKAYA,O.NIKONOV,A.NIKULIN, P.DUMAS,M.YAO,I.TANAKA,M.GARBER,G.GONGADZE, S.NIKONOV. DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX. RNA V. 8 1548 2002 ASTM RNARFU UK ISSN 1355-8382 Type [?]: 5S Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.50 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 68 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 24 Number of paired bases [?]: 44

Click on any header below for additional features.

Stem features Number of stems [?]: 6 Number of base pairs in stems [?]: 22 Maximum length of a stem [?]: 5 Average length of a stem [?]: 3.67 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -5.87 Minimum estimated free energy [?]: -11

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 2 Maximum number of free bases in bulge loops [?]: 2 Average number of free bases in bulge loops [?]: 1 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 4 Average number of free bases in internal loops: 2.5 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 3 Average internal loop absolute asymmetry: 3 Minimum internal loop absolute asymmetry: 3 Maximum internal loop relative asymmetry: 4 Average internal loop relative asymmetry: 4 Minimum internal loop relative asymmetry: 4

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AA non-canonical base pairs: 2

Pseudoknot features

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