RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00571 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00571 Molecule name [?]: STRUCTURE OF THE E. COLI RIBOSOMAL TERMINATION COMPLEX WITH RELEASE FACTOR 2 Source [?]: RCSB Protein Data Bank Source ID [?]: 1ML5 Reference [?]: B.P.KLAHOLZ,T.PAPE,A.V.ZAVIALOV,A.G.MYASNIKOV, E.V.ORLOVA,B.VESTERGAARD,M.EHRENBERG,M.VAN HEEL. STRUCTURE OF THE ESCHERICHIA COLI RIBOSOMAL TERMINATION COMPLEX WITH RELEASE FACTOR 2. NATURE V. 421 90 2003 ASTM NATUAS UK ISSN 0028-0836 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION14.00 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 82 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 32 Number of paired bases [?]: 50

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 9 Maximum length of a stem [?]: 5 Average length of a stem [?]: 4.5 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -7.9 Average estimated free energy [?]: -8.2 Minimum estimated free energy [?]: -8.5

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 8 Average number of free bases in hairpin loops [?]: 7.5 Minimum number of free bases in hairpin loop [?]: 7

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features Number of pseudoknots [?]: 1 Number of bands: 2 Number of base pairs in bands: 16 Maximum band length: 13 Average band length: 8 Minimum band length: 3 Maximum number of bands per pseudoknot: 2 Average number of bands per pseudoknot: 2 Minimum number of bands per pseudoknot: 2 Maximum number of un-bands: 0 Average number of un-bands: 0 Minimum number of un-bands: 0 Maximum number of in-bands: 2 Average number of in-bands: 2 Minimum number of in-bands: 2 Maximum number of unpaired bases: 13 Average number of unpaired bases: 13 Minimum number of unpaired bases: 13 Several ways to remove minimum number of base pairs, per molecule: No Minimum number of base pairs to remove, per molecule: 3 Maximum number of base pairs to remove, per pseudoknot: 3 Average number of base pairs to remove, per pseudoknot: 3 Minimum number of base pairs to remove, per pseudoknot: 3 Minimum number of bands to remove, per molecule: 1 Maximum number of bands to remove, per pseudoknot: 1 Average number of bands to remove, per pseudoknot: 1 Minimum number of bands to remove, per pseudoknot: 1

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