RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule PDB_00659
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00659
Molecule name [?]:CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX
Source [?]:RCSB Protein Data Bank
Source ID [?]:1QA6
Reference [?]:G.L.CONN,D.E.DRAPER,E.E.LATTMAN,A.G.GITTIS. CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX.. SCIENCE V. 284 1171 1999 ASTM SCIEAS US ISSN 0036-8075
Type [?]:Other Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:BACILLUS STEAROTHERMOPHILUS
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.80 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:116
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00433
Number of domains [?]:2
Number of unpaired bases [?]:48
Number of paired bases [?]:68

Click on any header below for additional features.

Stem features

Number of stems [?]:8
Number of base pairs in stems [?]:34
Maximum length of a stem [?]:6
Average length of a stem [?]:4.25
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-3.2
Average estimated free energy [?]:-6.88
Minimum estimated free energy [?]:-10

Hairpin loop features

Number of hairpin loops [?]:4
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:5.5
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:2
Maximum number of free bases in internal loops:2
Average number of free bases in internal loops:2
Minimum number of free bases in internal loop:2
Maximum internal loop absolute asymmetry:0
Average internal loop absolute asymmetry:0
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:8
Average number of free bases in multi-loops:3
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:8
Average multi-loop absolute asymmetry:5.33
Minimum multi-loop absolute asymmetry:1
Maximum multi-loop relative asymmetry:8
Average multi-loop relative asymmetry:2.03
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:3
Average number of branches in multi-loops:3
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 4
Total number of AG non-canonical base pairs:4

Pseudoknot features



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia