RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00681
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00681
Molecule name [?]:CRYSTAL STRUCTURE OF TRNA PSEUDOURIDINE SYNTHASE TRUB AND ITS RNA COMPLEX: RNA-PROTEIN RECOGNITION T
Source [?]:RCSB Protein Data Bank
Source ID [?]:1R3E
Reference [?]:H.PAN,S.AGARWALLA,D.T.MOUSTAKAS,J.FINER-MOORE, R.M.STROUD. CRYSTAL STRUCTURE OF TRNA PSEUDOURIDINE SYNTHASE TRUB AND ITS RNA COMPLEX: RNA RECOGNITION THROUGH A COMBINATION OF RIGID DOCKING AND INDUCED FIT. PROC.NATL.ACAD.SCI.USA V. 100 12648 2003 ASTM PNASA6 US ISSN 0027-8424
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:THERMOTOGA MARITIMA
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.10 ANGSTROMS; ran through RNAview
Number of molecules [?]:3
Length [?]:51
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:13
Number of paired bases [?]:38

Click on any header below for additional features.

Stem features

Number of stems [?]:4
Number of base pairs in stems [?]:19
Maximum length of a stem [?]:5
Average length of a stem [?]:4.75
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-5.9
Average estimated free energy [?]:-7.85
Minimum estimated free energy [?]:-8.5

Hairpin loop features

Number of hairpin loops [?]:2
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:3.5
Minimum number of free bases in hairpin loop [?]:7

Bulge loop features
Number of bulge loops [?]:2
Maximum number of free bases in bulge loops [?]:3
Average number of free bases in bulge loops [?]:1.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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