RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00691
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00691
Molecule name [?]:SOLUTION STRUCTURE OF THE COMPLEX FORMED BY THE TWO N- TERMINAL RNA-BINDING DOMAINS OF NUCLEOLIN AND
Source [?]:RCSB Protein Data Bank
Source ID [?]:1RKJ
Reference [?]:C.JOHANSSON,L.D.FINGER,L.TRANTIREK,T.D.MUELLER, S.KIM,I.A.LAIRD-OFFRINGA,J.FEIGON. SOLUTION STRUCTURE OF THE COMPLEX FORMED BY THE TWO N-TERMINAL RNA-BINDING DOMAINS OF NUCLEOLIN AND A PRE-RRNA TARGET.. J.MOL.BIOL. V. 337 799 2004 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Other Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:MESOCRICETUS AURATUS
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:21
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00200
Number of domains [?]:1
Number of unpaired bases [?]:9
Number of paired bases [?]:12

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:6
Maximum length of a stem [?]:6
Average length of a stem [?]:6
Minimum length of a stem [?]:6
Maximum estimated free energy [?]:-12.3
Average estimated free energy [?]:-12.3
Minimum estimated free energy [?]:-12.3

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:9
Average number of free bases in hairpin loops [?]:9
Minimum number of free bases in hairpin loop [?]:9

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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