RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00693 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00693 Molecule name [?]: A THREE-DIMENSIONAL MODEL FOR THE HAMMERHEAD RIBOZYME BASED ON FLUORESCENCE MEASUREMENTS Source [?]: RCSB Protein Data Bank Source ID [?]: 1RMN Reference [?]: T.TUSCHL,C.GOHLKE,T.M.JOVIN,E.WESTHOF,F.ECKSTEIN. A THREE-DIMENSIONAL MODEL FOR THE HAMMERHEAD RIBOZYME BASED ON FLUORESCENCE MEASUREMENTS.. SCIENCE V. 266 785 1994 ASTM SCIEAS US ISSN 0036-8075 Type [?]: Hammerhead Ribozyme [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 49 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 15 Number of paired bases [?]: 34

Click on any header below for additional features.

Stem features Number of stems [?]: 3 Number of base pairs in stems [?]: 17 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5.67 Minimum length of a stem [?]: 5 Maximum estimated free energy [?]: -10 Average estimated free energy [?]: -11.47 Minimum estimated free energy [?]: -13.1

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 7 Average number of free bases in multi-loops: 3.67 Minimum number of free bases in multi-loop: 1 Maximum multi-loop absolute asymmetry: 6 Average multi-loop absolute asymmetry: 4 Minimum multi-loop absolute asymmetry: 2 Maximum multi-loop relative asymmetry: 7 Average multi-loop relative asymmetry: 2.21 Minimum multi-loop relative asymmetry: 0.14 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AG non-canonical base pairs: 2

Pseudoknot features

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